GS_000XPRZ.1

Display Name: USA/GS_000XPRZ.1/2023-11-13
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Wang, X.

Submission details

Submission ID
PP504647.1
Submitting group
Date submitted
2025-03-05 12:56:55 UTC
Date released
2025-03-05 13:17:01 UTC

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
Biosample accession
INSDC accession
NCBI release date
2024-03-26
NCBI update date
2024-03-26
SRA run accession

Alignment states and QC metrics

Completeness
92.53%
Length
15050
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
3
Total SNPs
193
Total unknown nucs
960

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2023-11-13
Isolate name
MN-MDH-RSVA-00215

Host

Host name scientific
Homo sapiens
Host taxon id

Clade & Lineage

Lineage
A.D.3.6

Nucleotide mutations

Mutations called relative to the NC_006432.1 reference

Substitutions

  • C90T
  • C183T
  • G587T
  • A701G
  • G1034A
  • G1050A
  • G1077A
  • T1264C
  • T1359C
  • T1413A
  • T1422C
  • T1596C
  • C1677T
  • C1788T
  • C1806T
  • A1812G
  • T2165C
  • C2592T
    • Deletions
    None
    Insertions
    ins_3154:A, ins_15115:T, ins_2297:A

    Amino acid mutations

    Mutations called relative to the NC_006432.1 reference

    Substitutions

    F

  • F:T12I

    • G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:T113I
  • G:V131D
  • G:I134K
  • G:R151H
  • G:N178G
  • G:G224E
  • G:V225A
  • G:S243I
  • G:H258Q
  • G:K262E
  • G:I265L
  • G:H266L
  • G:P274L
  • G:D284G

    • L

  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L835M
  • L:L1438Q
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • L:I1776V

    • N

  • N:V352A

    • NS2

  • NS2:I35V

    • P

  • P:T92M
    • Deletions
    None
    Insertions
    None