Display Name: GS_000XPL9.1/2024-02-26
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnker, L.; Wang, X.

Submission details

Submission ID
PP978522.1
Date submitted
2024-11-21 13:21:37 UTC
Date released
2024-11-21 13:42:51 UTC

Data use terms

Data use terms
OPEN

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
Biosample accession
INSDC accession
NCBI release date
2024-07-10
NCBI update date
2024-07-10
SRA run accession

Alignment states and QC metrics

Completeness
98.79%
Length
15046
Total ambiguous nucs
0
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
0
Total SNPs
213
Total unknown nucs
6

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2024-02-26
Isolate name
MN-MDH-RSVA-00911

Host

Host name scientific
Homo sapiens
Host taxon id

Clade & Lineage

Lineage
A.D.1

Nucleotide mutations

Substitutions

  • C90T
  • T142C
  • C183T
  • G198A
  • T210C
  • A399G
  • A500T
  • C528A
  • G551A
  • G555A
  • T659C
  • G664A
  • T697C
  • T922C
  • C952T
  • G1000A
  • C1012T
  • T1035A
  • Deletions
    4592
    Insertions
    None

    Amino acid mutations

    Substitutions

    F

  • F:T8K
  • F:S377N
  • F:S493F
  • G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:T118I
  • G:I134K
  • G:L142S
  • G:P222L
  • G:G224E
  • G:S243I
  • G:G254E
  • G:K262E
  • G:I265L
  • G:Y273H
  • G:D284G
  • G:Y304H
  • G:T320A
  • L

  • L:N143D
  • L:P171L
  • L:T179S
  • L:R256K
  • L:Y598H
  • L:L1438Q
  • L:I1653V
  • L:K1661N
  • L:N1723S
  • L:E1725G
  • L:K1726R
  • L:G1731D
  • L:S1789F
  • L:H1897N
  • L:Y2163N
  • M

  • M:M43I
  • N

  • N:V352A
  • P

  • P:L55P
  • SH

  • SH:I38S
  • Deletions
    None
    Insertions
    None