Display Name: GS_000XAU6.1/2024-04-13
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnker, L.; Wang, X.

Submission details

Submission ID
PP957780.1
Date submitted
2024-11-21 13:21:37 UTC
Date released
2024-11-21 13:41:50 UTC

Data use terms

Data use terms
OPEN

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
Biosample accession
INSDC accession
NCBI release date
2024-07-03
NCBI update date
2024-07-03
SRA run accession

Alignment states and QC metrics

Completeness
90.31%
Length
15050
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
3
Total SNPs
208
Total unknown nucs
1298

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2024-04-13
Isolate name
MN-MDH-RSVA-00767

Host

Host name scientific
Homo sapiens
Host taxon id

Clade & Lineage

Lineage
A.D.3.4

Nucleotide mutations

Substitutions

  • C90T
  • C183T
  • G192A
  • C228A
  • A557T
  • A565G
  • G587T
  • G1034A
  • G1050A
  • G1077A
  • A1107T
  • T1359C
  • A1404C
  • T1413A
  • T1422C
  • A1623G
  • C1788T
  • C1806T
  • Deletions
    None
    Insertions
    ins_15115:TT, ins_3154:A

    Amino acid mutations

    Substitutions

    F

  • F:T12I
  • F:F114Y
  • G

  • G:P71L
  • G:H90Y
  • G:T113I
  • G:V131D
  • G:I134K
  • G:N178G
  • G:K204R
  • G:G224E
  • G:S243I
  • G:T245A
  • G:H258Q
  • G:K262E
  • G:I265L
  • G:H266L
  • G:E271K
  • G:D284G
  • G:P298L
  • G:S299G
  • L

  • L:N37D
  • L:P171L
  • L:R256K
  • L:Y598H
  • L:N599S
  • L:L835M
  • L:S1250N
  • L:I1314M
  • L:L1438Q
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • L:T1773A
  • L:K2064R
  • L:T2069A
  • N

  • N:V352A
  • P

  • P:L55P
  • P:T92M
  • Deletions
    None
    Insertions
    None