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GS_000XAU6.1
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Display Name: Japan/GS_000XAU6.1/2019-09-02
A. C. Langedijk,
R. J. Lebbink,
L. J. Bont &
A. Evers
Submission details
Submission ID
PP376682.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-05 12:56:55 UTC
Date released
2025-03-05 13:15:59 UTC
Authors
Author affiliations
UMC Utrecht, Paediatric Infectious Diseases
Alignment states and QC metrics
Completeness
100.00%
Length
15226
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
1
Total SNPs
133
Total unknown nucs
0
Sample details
Collection country
Japan
Collection date
2019-09-02
Isolate name
810103007
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
PP376682.1
NCBI release date
2024-04-09
NCBI update date
2024-04-09
Clade & Lineage
Lineage
A.D.2.2
Nucleotide mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
T
66
A
A
67
G
T
270
C
C
438
T
T
468
C
A
526
C
G
558
A
G
637
A
C
739
T
C
983
T
C
990
A
C
1012
T
C
1030
A
G
1043
A
G
1050
A
T
1359
C
T
1621
C
T
1647
C
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Deletions
None
Insertions
ins_3154:A
Amino acid mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
F
F:
A
107
T
G
G:
H
67
N
G:
P
71
L
G:
H
90
Y
G:
L
101
F
G:
I
133
N
G:
P
143
T
G:
G
224
E
G:
I
265
L
G:
T
269
I
G:
D
284
G
L
L:
N
37
D
L:
P
171
L
L:
R
256
K
L:
V
1405
I
L:
L
1438
Q
L:
N
1723
S
L:
I
1741
M
L:
T
1756
A
L:
T
1773
M
N
N:
Y
216
H
N:
V
352
A
P
P:
L
55
P
P:
T
69
I
SH
SH:
T
64
A
Deletions
None
Insertions
None
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