GS_000XARC.1

Display Name: GS_000XARC.1/2024-04-05
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnker, L.; Wang, X.

Submission details

Submission ID
PP957777.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-21 13:21:37 UTC
Date released
2024-11-21 13:41:50 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-11-21 13:22insdc_ingest_userOPEN

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
PRJNA1048457
Biosample accession
SAMN42036962
INSDC accession
PP957777.1
NCBI release date
2024-07-03
NCBI update date
2024-07-03
SRA run accession
SRR29541257

Alignment states and QC metrics

Completeness
91.94%
Length
14859
Total ambiguous nucs
0
Total deleted nucs
5
Total frame shifts
0
Total inserted nucs
5
Total SNPs
224
Total unknown nucs
861

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2024-04-05
Isolate name
MN-MDH-RSVA-00764

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
A.D.5.1

Nucleotide mutations

Substitutions

  • C90T
  • C183T
  • T497C
  • T697C
  • T1359C
  • T1380C
  • G1383A
  • T1422C
  • T1443C
  • G1662A
  • T1756C
  • C1788T
  • C1806T
  • T2165C
  • T2316A
  • C2362T
  • A2392G
  • T2481C
    • Deletions
    3213, 4593, 7516-7518
    Insertions
    ins_4104:AAAAC

    Amino acid mutations

    Substitutions

    F

  • F:T122A

    • G

  • G:A57V
  • G:P71L
  • G:H90Y
  • G:L101F
  • G:T118I
  • G:Q127L
  • G:I134K
  • G:S144N
  • G:P206Q
  • G:K209R
  • G:G224K
  • G:V225A
  • G:S243I
  • G:L248I
  • G:K253Q
  • G:K262E
  • G:I265L
  • G:G272S

    • L

  • L:P171L
  • L:R256K
  • L:Y598H
  • L:R1370C
  • L:L1438Q
  • L:P1720L
  • L:N1723G
  • L:K1727E
  • L:G1731D
  • L:N1916Y
  • L:V1943D
  • L:Y1974H

    • M

  • M:M73L

    • N

  • N:Y216H
  • N:V352A

    • P

  • P:L55P
    • Deletions
    None
    Insertions
    None