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Influenza A/H1N1pdm
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RSV-A
RSV B
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GS_000XAPG.1
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Display Name: Japan/GS_000XAPG.1/2018-02-02
Langedijk,
A. C.; Lebbink,
R. J.; Bont,
L. J.; Evers,
A.
Submission details
Submission ID
PP376677.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-05 12:56:55 UTC
Date released
2025-03-05 13:15:59 UTC
Authors
Author affiliations
UMC Utrecht, Paediatric Infectious Diseases
Alignment states and QC metrics
Completeness
99.99%
Length
15223
Total ambiguous nucs
0
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
1
Total SNPs
164
Total unknown nucs
0
Sample details
Collection country
Japan
Collection date
2018-02-02
Isolate name
810101013
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
PP376677.1
NCBI release date
2024-04-09
NCBI update date
2024-04-09
Clade & Lineage
Lineage
A.D
Nucleotide mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
T
66
A
A
67
G
C
90
T
C
183
T
C
1012
T
A
1039
G
G
1050
A
T
1065
A
T
1070
A
A
1072
T
T
1359
C
A
1680
T
G
1719
A
C
1788
T
C
1806
T
T
2165
C
A
2392
G
T
2481
C
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Deletions
4592
Insertions
ins_1070:A
Amino acid mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
F
F:
L
6
F
F:
T
12
I
F:
S
24
F
G
G:
P
71
L
G:
L
101
F
G:
S
121
N
G:
I
134
K
G:
K
223
M
G:
G
224
E
G:
S
243
I
G:
Q
261
K
G:
K
262
E
G:
I
265
L
G:
P
274
L
G:
S
277
T
G:
V
279
I
G:
D
284
G
G:
P
298
L
G:
*
322
G
L
L:
P
171
L
L:
A
173
T
L:
R
256
K
L:
V
335
I
L:
Y
598
H
L:
L
1438
Q
L:
H
1599
R
L:
N
1723
S
L:
G
1731
D
L:
I
1734
V
L:
K
1844
R
N
N:
V
352
A
P
P:
L
55
P
SH
SH:
L
57
P
Deletions
None
Insertions
None
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