GenSpectrum
RSV-A
Influenza B/Victoria
Influenza A/H1N1pdm
Influenza A/H3N2
Influenza A/H5N1
Influenza A
Influenza B
RSV-A
RSV B
Browse
Loculus
Browse
Docs
API docs
GS_000XANJ.1
Download
Download FASTA
Download metadata TSV
Display Name: Canada/GS_000XANJ.1/2019-12-02
Langedijk,
A. C.; Lebbink,
R. J.; Bont,
L. J.; Evers,
A.
Submission details
Submission ID
PP376676.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-05 12:56:55 UTC
Date released
2025-03-05 13:15:59 UTC
Authors
Author affiliations
UMC Utrecht, Paediatric Infectious Diseases
Alignment states and QC metrics
Completeness
100.00%
Length
15224
Total ambiguous nucs
0
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
0
Total SNPs
188
Total unknown nucs
0
Sample details
Collection country
Canada
Collection date
2019-12-02
Isolate name
010103014
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
PP376676.1
NCBI release date
2024-04-09
NCBI update date
2024-04-09
Clade & Lineage
Lineage
A.D.1
Nucleotide mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
T
66
A
A
67
G
C
90
T
C
183
T
G
198
A
A
303
T
A
399
G
G
551
A
G
555
A
G
664
A
T
697
C
G
1000
A
C
1012
T
T
1035
A
T
1048
C
G
1050
A
G
1662
A
T
1668
C
Show more
Deletions
4592
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
G
G:
P
71
L
G:
H
90
Y
G:
L
101
F
G:
G
106
R
G:
I
134
K
G:
L
142
S
G:
G
224
E
G:
S
243
I
G:
K
262
E
G:
I
265
L
G:
D
284
G
G:
P
300
L
G:
Y
304
H
G:
T
320
A
L
L:
N
143
D
L:
P
171
L
L:
T
179
S
L:
R
256
K
L:
Y
598
H
L:
V
1084
I
L:
L
1438
Q
L:
I
1653
V
L:
K
1661
N
L:
N
1719
Y
L:
E
1725
G
L:
G
1731
D
L:
Y
2163
N
M
M:
M
43
I
N
N:
V
352
A
P
P:
L
55
P
SH
SH:
I
38
S
Deletions
None
Insertions
None
Load sequences