Display Name: Canada/GS_000XAKQ.1/2020-01-02
Langedijk, A. C.; Lebbink, R. J.; Bont, L. J.; Evers, A.

Submission details

Submission ID
PP376673.1
Date submitted
2025-03-05 12:56:55 UTC
Date released
2025-03-05 13:15:59 UTC

Authors

Author affiliations
UMC Utrecht, Paediatric Infectious Diseases

Alignment states and QC metrics

Completeness
100.00%
Length
15223
Total ambiguous nucs
0
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
0
Total SNPs
174
Total unknown nucs
0

Sample details

Collection country
Canada
Collection date
2020-01-02
Isolate name
010203022

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession
NCBI release date
2024-04-09
NCBI update date
2024-04-09

Clade & Lineage

Lineage
A.D

Nucleotide mutations

Mutations called relative to the NC_006432.1 reference

Substitutions

  • C58T
  • T66A
  • A67G
  • C90T
  • C183T
  • A518G
  • G670A
  • G766A
  • T826C
  • G901A
  • T945C
  • C1012T
  • A1039G
  • G1050A
  • C1106T
  • T1359C
  • A1476T
  • G1581A
  • Deletions
    4174, 4592
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_006432.1 reference

    Substitutions

    G

  • G:P71L
  • G:H90Y
  • G:P95L
  • G:L101F
  • G:I134K
  • G:T200P
  • G:P215L
  • G:G224E
  • G:V225A
  • G:S243I
  • G:N255D
  • G:K262E
  • G:I265L
  • G:P274L
  • G:S275N
  • G:V279I
  • G:D284G
  • G:E295V
  • G:P298L
  • L

  • L:P171L
  • L:R256K
  • L:Y598H
  • L:I757T
  • L:L1438Q
  • L:P1720T
  • L:N1723S
  • L:G1731D
  • L:V2113C
  • N

  • N:E122D
  • N:V352A
  • NS2

  • NS2:I116T
  • P

  • P:L55P
  • Deletions
    None
    Insertions
    None