GS_000XAJS.1

Display Name: Spain/GS_000XAJS.1/2019-01-02
Langedijk, A. C.; Lebbink, R. J.; Bont, L. J.; Evers, A.

Submission details

Submission ID
PP376672.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-05 12:56:55 UTC
Date released
2025-03-05 13:15:59 UTC

Authors

Author affiliations
UMC Utrecht, Paediatric Infectious Diseases

Alignment states and QC metrics

Completeness
99.99%
Length
15232
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
8
Total SNPs
60
Total unknown nucs
0

Sample details

Collection country
Spain
Collection date
2019-01-02
Isolate name
340102015

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession
PP376672.1
NCBI release date
2024-04-09
NCBI update date
2024-04-09

Clade & Lineage

Lineage
A.D.2.2.1

Nucleotide mutations

Mutations called relative to the NC_006432.1 reference

Substitutions

  • T659C
  • T673C
  • G1050A
  • T1359C
  • T1671C
  • T2165C
  • G2298A
  • T2481C
  • A3086G
  • C3103T
  • C3143T
  • C3306T
  • T3540C
  • A3564G
  • C3927T
  • C4037T
  • C4039T
  • G4244A
    • Deletions
    None
    Insertions
    ins_3215:GA, ins_5227:AACAAA

    Amino acid mutations

    Mutations called relative to the NC_006432.1 reference

    Substitutions

    F

  • F:T8I

    • G

  • G:I55V
  • G:P71L
  • G:H90Y
  • G:L101F
  • G:T235I
  • G:Y273H
  • G:Y280H
  • G:D284G
  • G:L310P
  • G:L314P

    • L

  • L:L1438Q
  • L:N1723S

    • N

  • N:V352A

    • P

  • P:L55P
    • Deletions
    None
    Insertions
    ins_G:192:NK