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GS_000XAHU.1
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Display Name: Brazil/GS_000XAHU.1/2019-06-19
A. C. Langedijk,
R. J. Lebbink,
L. J. Bont &
A. Evers
Submission details
Submission ID
PP376671.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-05 12:56:55 UTC
Date released
2025-03-05 13:15:59 UTC
Authors
Author affiliations
UMC Utrecht, Paediatric Infectious Diseases
Alignment states and QC metrics
Completeness
99.99%
Length
15225
Total ambiguous nucs
1
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
2
Total SNPs
132
Total unknown nucs
0
Sample details
Collection country
Brazil
Collection date
2019-06-19
Isolate name
550102142
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
PP376671.1
NCBI release date
2024-04-09
NCBI update date
2024-04-09
Clade & Lineage
Lineage
A.D.2.2
Nucleotide mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
T
66
A
A
67
G
T
468
C
A
526
C
G
558
A
C
626
T
G
637
A
C
904
T
C
990
A
C
1012
T
G
1050
A
G
1093
A
T
1359
C
T
1621
C
T
1647
C
T
1668
C
T
1776
A
C
1788
T
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Deletions
3214, 3215
Insertions
ins_3183:GA
Amino acid mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
G
G:
H
67
N
G:
P
71
L
G:
H
90
Y
G:
L
101
F
G:
I
133
N
G:
L
142
S
G:
P
143
T
G:
G
224
E
G:
I
265
L
G:
D
284
G
G:
N
318
K
L
L:
N
37
D
L:
T
98
I
L:
P
171
L
L:
R
256
K
L:
L
1438
Q
L:
K
1661
N
L:
N
1723
S
L:
I
1741
M
L:
T
1773
M
N
N:
V
352
A
NS2
NS2:
P
10
S
P
P:
L
55
P
P:
T
69
I
Deletions
None
Insertions
None
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