Display Name: Brazil/GS_000XAHU.1/2019-06-19
Langedijk, A. C.; Lebbink, R. J.; Bont, L. J.; Evers, A.

Submission details

Submission ID
PP376671.1
Date submitted
2025-03-05 12:56:55 UTC
Date released
2025-03-05 13:15:59 UTC

Authors

Author affiliations
UMC Utrecht, Paediatric Infectious Diseases

Alignment states and QC metrics

Completeness
99.99%
Length
15225
Total ambiguous nucs
1
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
2
Total SNPs
132
Total unknown nucs
0

Sample details

Collection country
Brazil
Collection date
2019-06-19
Isolate name
550102142

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession
NCBI release date
2024-04-09
NCBI update date
2024-04-09

Clade & Lineage

Lineage
A.D.2.2

Nucleotide mutations

Mutations called relative to the NC_006432.1 reference

Substitutions

  • T66A
  • A67G
  • T468C
  • A526C
  • G558A
  • C626T
  • G637A
  • C904T
  • C990A
  • C1012T
  • G1050A
  • G1093A
  • T1359C
  • T1621C
  • T1647C
  • T1668C
  • T1776A
  • C1788T
  • Deletions
    3214, 3215
    Insertions
    ins_3183:GA

    Amino acid mutations

    Mutations called relative to the NC_006432.1 reference

    Substitutions

    G

  • G:H67N
  • G:P71L
  • G:H90Y
  • G:L101F
  • G:I133N
  • G:L142S
  • G:P143T
  • G:G224E
  • G:I265L
  • G:D284G
  • G:N318K
  • L

  • L:N37D
  • L:T98I
  • L:P171L
  • L:R256K
  • L:L1438Q
  • L:K1661N
  • L:N1723S
  • L:I1741M
  • L:T1773M
  • N

  • N:V352A
  • NS2

  • NS2:P10S
  • P

  • P:L55P
  • P:T69I
  • Deletions
    None
    Insertions
    None