GS_000XAGX.1

Display Name: Finland/GS_000XAGX.1/2018-03-19
Langedijk, A. C.; Lebbink, R. J.; Bont, L. J.; Evers, A.

Submission details

Submission ID
PP376670.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-05 12:56:55 UTC
Date released
2025-03-05 13:15:59 UTC

Authors

Author affiliations
UMC Utrecht, Paediatric Infectious Diseases

Alignment states and QC metrics

Completeness
99.36%
Length
15125
Total ambiguous nucs
0
Total deleted nucs
3
Total frame shifts
0
Total inserted nucs
1
Total SNPs
110
Total unknown nucs
0

Sample details

Collection country
Finland
Collection date
2018-03-19
Isolate name
358101046

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession
PP376670.1
NCBI release date
2024-04-09
NCBI update date
2024-04-09

Clade & Lineage

Lineage
A.D.2.2

Nucleotide mutations

Mutations called relative to the NC_006432.1 reference

Substitutions

  • A53G
  • T66A
  • A67G
  • A135G
  • A274G
  • G551A
  • A907G
  • C999T
  • G1050A
  • T1359C
  • A1730C
  • C1788T
  • C1806T
  • T1836C
  • T2165C
  • A2392G
  • T2481C
  • G2782A
    • Deletions
    7554, 7555, 15115
    Insertions
    ins_3183:G

    Amino acid mutations

    Mutations called relative to the NC_006432.1 reference

    Substitutions

    G

  • G:H67Q
  • G:P71L
  • G:H90Y
  • G:L101F
  • G:T130I
  • G:G224E
  • G:G232R
  • G:I265F
  • G:P274L
  • G:D284G
  • G:L289P

    • L

  • L:D146E
  • L:P171L
  • L:R256K
  • L:L1438Q
  • L:N1723S
  • L:I1950L
  • L:I2037T

    • N

  • N:N207T
  • N:V352A

    • NS1

  • NS1:N69D

    • P

  • P:L55P
    • Deletions
    None
    Insertions
    None