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GS_000XAD3.1
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Display Name: France/GS_000XAD3.1/2018-12-19
A. C. Langedijk,
R. J. Lebbink,
L. J. Bont &
A. Evers
Submission details
Submission ID
PP376667.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-05 12:56:55 UTC
Date released
2025-03-05 13:15:59 UTC
Authors
Author affiliations
UMC Utrecht, Paediatric Infectious Diseases
Alignment states and QC metrics
Completeness
99.99%
Length
15222
Total ambiguous nucs
0
Total deleted nucs
3
Total frame shifts
0
Total inserted nucs
1
Total SNPs
174
Total unknown nucs
0
Sample details
Collection country
France
Collection date
2018-12-19
Isolate name
330102002
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
PP376667.1
NCBI release date
2024-04-09
NCBI update date
2024-04-09
Clade & Lineage
Lineage
A.D.5
Nucleotide mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
T
66
A
A
67
G
C
90
T
C
183
T
T
463
C
A
607
G
A
638
G
G
664
A
A
750
G
T
886
C
A
940
C
A
1009
G
C
1012
T
C
1030
T
G
1050
A
T
1320
C
T
1359
C
A
1605
G
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Deletions
4592, 15114, 15115
Insertions
ins_3213:A
Amino acid mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
F
F:
L
15
F
F:
A
103
V
F:
T
122
A
G
G:
P
71
L
G:
H
90
Y
G:
I
134
K
G:
P
206
Q
G:
G
224
E
G:
S
243
I
G:
L
248
I
G:
K
262
E
G:
I
265
L
G:
P
276
Q
G:
D
284
G
G:
V
303
A
G:
Y
304
H
G:
L
310
P
G:
T
320
A
L
L:
P
171
L
L:
T
179
A
L:
R
256
K
L:
Y
598
H
L:
L
1438
Q
L:
N
1723
G
L:
G
1731
D
L:
V
1943
D
L:
S
2079
N
N
N:
V
352
A
NS2
NS2:
M
14
V
NS2:
K
51
R
P
P:
L
55
P
Deletions
None
Insertions
None
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