GS_000XAC5.1

Display Name: GS_000XAC5.1/2024-03-22
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnker, L.; Wang, X.

Submission details

Submission ID
PP957764.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-21 13:21:37 UTC
Date released
2024-11-21 13:41:50 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-11-21 13:22insdc_ingest_userOPEN

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
PRJNA1048457
Biosample accession
SAMN42036949
INSDC accession
PP957764.1
NCBI release date
2024-07-03
NCBI update date
2024-07-03
SRA run accession
SRR29541271

Alignment states and QC metrics

Completeness
95.36%
Length
15048
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
1
Total SNPs
202
Total unknown nucs
529

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2024-03-22
Isolate name
MN-MDH-RSVA-00751

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
A.D.3

Nucleotide mutations

Substitutions

  • C90T
  • C183T
  • A357G
  • T468A
  • A563G
  • G587T
  • C589T
  • C686T
  • G1034A
  • G1049A
  • G1050A
  • G1077A
  • A1275G
  • T1359C
  • G1368A
  • T1413A
  • T1422C
  • A1602G
    • Deletions
    None
    Insertions
    ins_3154:A

    Amino acid mutations

    Substitutions

    F

  • F:T12I
  • F:S276N

    • G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:T113I
  • G:V131D
  • G:I134K
  • G:N178G
  • G:G224E
  • G:P230T
  • G:S243I
  • G:H258Q
  • G:K262E
  • G:I265L
  • G:H266L
  • G:D284G
  • G:P298L
  • G:S299N
  • G:S301T

    • L

  • L:G144R
  • L:P171L
  • L:A173S
  • L:R256K
  • L:L508I
  • L:Y598H
  • L:L835M
  • L:E1190D
  • L:L1438Q
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • L:K2064R
  • L:V2129I
  • L:Y2163C

    • N

  • N:V352A

    • P

  • P:L55P
  • P:T72N
  • P:T92M

    • SH

  • SH:A60T
    • Deletions
    None
    Insertions
    None