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GS_000X9LP.1
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Display Name: Spain/GS_000X9LP.1/2020-01-17
A. C. Langedijk,
R. J. Lebbink,
L. J. Bont &
A. Evers
Submission details
Submission ID
PP376640.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-05 12:56:55 UTC
Date released
2025-03-05 13:15:59 UTC
Authors
Author affiliations
UMC Utrecht, Paediatric Infectious Diseases
Alignment states and QC metrics
Completeness
99.95%
Length
15219
Total ambiguous nucs
0
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
3
Total SNPs
181
Total unknown nucs
0
Sample details
Collection country
Spain
Collection date
2020-01-17
Isolate name
340103029
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
PP376640.1
NCBI release date
2024-04-09
NCBI update date
2024-04-09
Clade & Lineage
Lineage
A.D.3
Nucleotide mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
T
59
C
T
66
A
A
67
G
C
90
T
C
183
T
G
587
T
T
667
C
A
992
G
C
1012
T
G
1034
A
G
1049
A
G
1050
A
G
1077
A
T
1359
C
T
1413
A
T
1422
C
C
1460
T
C
1788
T
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Deletions
4592
Insertions
ins_15115:TT, ins_3154:A
Amino acid mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
F
F:
T
12
I
F:
H
159
Y
G
G:
R
8
H
G:
P
71
L
G:
H
90
Y
G:
L
101
F
G:
T
113
I
G:
V
131
D
G:
I
134
K
G:
N
178
G
G:
G
224
E
G:
S
243
I
G:
H
258
Q
G:
K
262
E
G:
I
265
F
G:
H
266
L
G:
P
274
L
G:
D
284
G
G:
P
298
L
L
L:
G
144
V
L:
P
171
L
L:
R
256
K
L:
Y
598
H
L:
L
835
M
L:
D
1047
N
L:
L
1438
Q
L:
D
1644
E
L:
T
1709
A
L:
N
1723
S
L:
E
1725
G
L:
G
1731
D
L:
V
2113
A
N
N:
A
117
V
N:
V
352
A
P
P:
L
55
P
P:
T
92
M
Deletions
None
Insertions
None
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