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GS_000X9KR.1
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Display Name: Germany/GS_000X9KR.1/2019-01-17
Langedijk, A. C.;
Lebbink, R. J.;
Bont, L. J.;
Evers, A.
Submission details
Submission ID
PP376639.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-05 12:56:55 UTC
Date released
2025-03-05 13:15:59 UTC
Authors
Author affiliations
UMC Utrecht, Paediatric Infectious Diseases
Alignment states and QC metrics
Completeness
99.99%
Length
15223
Total ambiguous nucs
0
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
1
Total SNPs
127
Total unknown nucs
0
Sample details
Collection country
Germany
Collection date
2019-01-17
Isolate name
490102008
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
PP376639.1
NCBI release date
2024-04-09
NCBI update date
2024-04-09
Clade & Lineage
Lineage
A.D.2.2
Nucleotide mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
T
66
A
A
67
G
T
372
C
T
468
C
A
526
C
A
556
G
G
558
A
C
823
T
G
901
T
C
1012
T
G
1050
A
T
1359
C
A
1487
G
T
1776
A
C
1788
T
C
1806
T
T
1920
C
T
2165
C
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Deletions
4174, 4592
Insertions
ins_7504:A
Amino acid mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
G
G:
P
71
L
G:
H
90
Y
G:
L
101
F
G:
R
151
H
G:
G
224
E
G:
I
265
L
G:
Y
273
H
G:
D
284
G
L
L:
P
171
L
L:
R
256
K
L:
V
1334
I
L:
L
1438
Q
L:
N
1723
S
L:
I
1741
M
L:
M
1742
I
N
N:
N
126
S
N:
V
352
A
P
P:
L
55
P
Deletions
None
Insertions
None
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