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GS_000X9E2.1
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Display Name: Canada/GS_000X9E2.1/2020-02-16
Langedijk, A. C.;
Lebbink, R. J.;
Bont, L. J.;
Evers, A.
Submission details
Submission ID
PP376634.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-05 12:56:55 UTC
Date released
2025-03-05 13:15:59 UTC
Authors
Author affiliations
UMC Utrecht, Paediatric Infectious Diseases
Alignment states and QC metrics
Completeness
100.00%
Length
15226
Total ambiguous nucs
0
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
2
Total SNPs
132
Total unknown nucs
0
Sample details
Collection country
Canada
Collection date
2020-02-16
Isolate name
010103033
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
PP376634.1
NCBI release date
2024-04-09
NCBI update date
2024-04-09
Clade & Lineage
Lineage
A.D.2.2
Nucleotide mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
T
66
A
A
67
G
C
507
T
C
531
T
A
655
G
C
850
T
G
925
A
C
1036
T
G
1049
A
G
1050
A
A
1171
T
A
1200
T
T
1287
C
T
1326
C
T
1349
C
T
1359
C
A
1455
G
G
1560
A
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Deletions
4175
Insertions
ins_547:AA
Amino acid mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
F
F:
A
107
T
G
G:
P
71
L
G:
H
90
Y
G:
L
101
F
G:
G
224
E
G:
V
225
A
G:
I
265
L
G:
H
266
Y
G:
D
284
G
G:
E
287
K
L
L:
P
171
L
L:
R
256
K
L:
L
1438
Q
L:
N
1723
S
L:
K
1749
R
L:
H
1804
Q
L:
V
2129
I
M
M:
P
44
Q
M:
M
254
I
N
N:
S
21
C
N:
I
80
T
N:
V
352
A
P
P:
L
55
P
Deletions
None
Insertions
None
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