GS_000X9C6.1

Display Name: GS_000X9C6.1/2024-03-17
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnker, L.; Wang, X.

Submission details

Submission ID
PP934462.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-21 13:21:37 UTC
Date released
2024-11-21 13:41:50 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-11-21 13:22insdc_ingest_userOPEN

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
PRJNA1048457
Biosample accession
SAMN41877337
INSDC accession
PP934462.1
NCBI release date
2024-06-26
NCBI update date
2024-06-26
SRA run accession
SRR29436697

Alignment states and QC metrics

Completeness
92.47%
Length
14854
Total ambiguous nucs
0
Total deleted nucs
5
Total frame shifts
0
Total inserted nucs
0
Total SNPs
196
Total unknown nucs
780

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2024-03-17
Isolate name
MN-MDH-RSVA-00680

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
A.D.5.2

Nucleotide mutations

Substitutions

  • C90T
  • C183T
  • T246C
  • A260G
  • C516T
  • T697C
  • A940C
  • A1009G
  • C1012T
  • A1021G
  • T1028C
  • G1050A
  • A1051C
  • T1359C
  • G1368A
  • T1380C
  • T1422C
  • T1443C
    • Deletions
    3214, 4592, 7516-7518
    Insertions
    None

    Amino acid mutations

    Substitutions

    G

  • G:A57V
  • G:P71L
  • G:H90Y
  • G:I134K
  • G:P206Q
  • G:K209R
  • G:G224E
  • G:V225A
  • G:S243I
  • G:L248I
  • G:H258Y
  • G:K262E
  • G:I265L
  • G:D284G
  • G:V303A
  • G:Y304H
  • G:L310P
  • G:T319I
  • G:T320A

    • L

  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L1438Q
  • L:N1723G
  • L:E1725G
  • L:G1731D
  • L:A1927T
  • L:V1943D

    • M

  • M:M73L

    • N

  • N:V352A

    • NS1

  • NS1:D64G

    • P

  • P:L55P
  • P:T69I
    • Deletions
    None
    Insertions
    None