GS_000X9B8.1

Display Name: Finland/GS_000X9B8.1/2017-12-16
Langedijk, A. C.; Lebbink, R. J.; Bont, L. J.; Evers, A.

Submission details

Submission ID
PP376631.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-05 12:56:55 UTC
Date released
2025-03-05 13:15:59 UTC

Authors

Author affiliations
UMC Utrecht, Paediatric Infectious Diseases

Alignment states and QC metrics

Completeness
99.98%
Length
15222
Total ambiguous nucs
1
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
0
Total SNPs
102
Total unknown nucs
0

Sample details

Collection country
Finland
Collection date
2017-12-16
Isolate name
358101003

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession
PP376631.1
NCBI release date
2024-04-09
NCBI update date
2024-04-09

Clade & Lineage

Lineage
A.D.2.2

Nucleotide mutations

Mutations called relative to the NC_006432.1 reference

Substitutions

  • T66A
  • A67G
  • T231A
  • A576G
  • G1050A
  • T1359C
  • C1716A
  • C1788T
  • C1806T
  • T2073C
  • T2165C
  • A2392G
  • T2481C
  • A2776G
  • G2914A
  • G2918A
  • G2980A
  • C3016T
    • Deletions
    3190
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_006432.1 reference

    Substitutions

    F

  • F:N88T

    • G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:G224E
  • G:L248P
  • G:I265L
  • G:P274L
  • G:D284G

    • L

  • L:P171L
  • L:R256K
  • L:R511K
  • L:N1021D
  • L:E1190G
  • L:L1438Q
  • L:N1723S

    • M

  • M:I159L

    • N

  • N:V352A

    • P

  • P:L55P
  • P:E201K
    • Deletions
    None
    Insertions
    None