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Influenza A/H5N1
RSV-A
RSV B
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GS_000X9AA.1
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Display Name: GS_000X9AA.1/2024-03-07
Kunerth,
H. D.; Plumb,
M.; Namugenyi,
S.; Evans,
D.; Bohnker,
L.; Wang,
X.
Submission details
Submission ID
PP934460.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-21 13:21:37 UTC
Date released
2024-11-21 13:41:50 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-11-21 13:22
insdc_ingest_user
OPEN
Close
(history)
Authors
Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab
INSDC
Bioproject accession
PRJNA1048457
Biosample accession
SAMN41877335
INSDC accession
PP934460.1
NCBI release date
2024-06-26
NCBI update date
2024-06-26
SRA run accession
SRR29436699
Alignment states and QC metrics
Completeness
97.50%
Length
15051
Total ambiguous nucs
0
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
5
Total SNPs
228
Total unknown nucs
203
Sample details
Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2024-03-07
Isolate name
MN-MDH-RSVA-00678
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Clade & Lineage
Lineage
A.D.1.8
Nucleotide mutations
Substitutions
C
90
T
C
183
T
G
198
A
T
249
A
T
387
C
A
506
T
G
520
A
C
528
T
G
551
A
G
590
A
G
664
A
G
693
A
T
697
C
G
972
A
G
1000
A
C
1012
T
T
1048
C
G
1050
A
Show more
Deletions
4592
Insertions
ins_547:AAAA, ins_2299:G
Amino acid mutations
Substitutions
F
F:
T
13
A
G
G:
P
71
L
G:
H
90
Y
G:
L
101
F
G:
G
106
E
G:
I
134
K
G:
T
137
A
G:
L
142
S
G:
K
209
R
G:
G
224
E
G:
V
225
A
G:
S
243
I
G:
N
255
T
G:
K
262
E
G:
I
265
L
G:
Y
280
H
G:
D
284
G
G:
E
287
K
G:
Y
304
H
L
L:
S
100
L
L:
N
143
D
L:
N
167
T
L:
P
171
L
L:
T
179
S
L:
R
256
K
L:
Y
598
H
L:
L
1438
Q
L:
I
1653
V
L:
K
1661
N
L:
N
1723
S
L:
E
1725
G
L:
G
1731
D
L:
M
1742
I
L:
I
1800
L
L:
N
2025
S
M
M:
M
43
I
N
N:
V
352
A
NS2
NS2:
R
32
K
P
P:
L
55
P
Deletions
None
Insertions
None
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