GS_000X96J.1

Display Name: GS_000X96J.1/2024-03-05
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnker, L.; Wang, X.

Submission details

Submission ID
PP934456.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-21 13:21:37 UTC
Date released
2024-11-21 13:41:50 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-11-21 13:22insdc_ingest_userOPEN

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
PRJNA1048457
Biosample accession
SAMN41877331
INSDC accession
PP934456.1
NCBI release date
2024-06-26
NCBI update date
2024-06-26
SRA run accession
SRR29436642

Alignment states and QC metrics

Completeness
93.79%
Length
15045
Total ambiguous nucs
0
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
0
Total SNPs
220
Total unknown nucs
767

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2024-03-05
Isolate name
MN-MDH-RSVA-00674

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
A.D.1.6

Nucleotide mutations

Substitutions

  • C90T
  • C183T
  • G198A
  • A303T
  • C360T
  • A399G
  • T497C
  • G551A
  • G555A
  • G664A
  • T697C
  • G747A
  • G755A
  • G1000A
  • C1012T
  • C1027A
  • T1035A
  • G1050A
    • Deletions
    4175, 4592
    Insertions
    None

    Amino acid mutations

    Substitutions

    G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:G106E
  • G:P120L
  • G:S121I
  • G:I134K
  • G:L142S
  • G:P143S
  • G:P217S
  • G:G224E
  • G:K240N
  • G:N242T
  • G:S243I
  • G:K262E
  • G:I265L
  • G:D284G
  • G:G296S

    • L

  • L:G7R
  • L:N143D
  • L:P171L
  • L:T179S
  • L:R256K
  • L:I261V
  • L:Y598H
  • L:M1225I
  • L:L1438Q
  • L:T1489N
  • L:I1653V
  • L:K1661N
  • L:H1690Y
  • L:N1719Y
  • L:N1723S
  • L:N1724D
  • L:E1725G
  • L:G1731D
  • L:Y2163N

    • M

  • M:M43I

    • N

  • N:V352A

    • NS2

  • NS2:R50K
  • NS2:D53N

    • P

  • P:L55P

    • SH

  • SH:I38S
    • Deletions
    None
    Insertions
    None