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GS_000X96J.1
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Display Name: Japan/GS_000X96J.1/2018-03-15
Langedijk, A. C.;
Lebbink, R. J.;
Bont, L. J.;
Evers, A.
Submission details
Submission ID
PP376626.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-05 12:56:55 UTC
Date released
2025-03-05 13:15:59 UTC
Authors
Author affiliations
UMC Utrecht, Paediatric Infectious Diseases
Alignment states and QC metrics
Completeness
99.72%
Length
15184
Total ambiguous nucs
1
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
1
Total SNPs
130
Total unknown nucs
0
Sample details
Collection country
Japan
Collection date
2018-03-15
Isolate name
810101022
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
PP376626.1
NCBI release date
2024-04-09
NCBI update date
2024-04-09
Clade & Lineage
Lineage
A.D.2.2
Nucleotide mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
T
66
A
A
67
G
T
468
C
A
526
C
G
558
A
G
637
A
T
905
C
C
990
A
C
1012
T
G
1050
A
T
1359
C
C
1678
T
T
1761
A
T
1776
A
C
1788
T
C
1806
T
T
1897
C
A
1902
G
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Deletions
3213
Insertions
ins_3183:G
Amino acid mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
G
G:
H
67
N
G:
P
71
L
G:
H
90
Y
G:
L
101
F
G:
I
133
N
G:
P
143
T
G:
G
224
E
G:
I
265
L
G:
P
274
L
G:
D
284
G
L
L:
N
37
D
L:
G
144
E
L:
P
171
L
L:
R
256
K
L:
L
1438
Q
L:
N
1723
S
L:
E
1725
G
L:
I
1741
M
L:
T
1773
M
L:
V
1965
I
L:
K
2064
R
N
N:
V
352
A
P
P:
L
55
P
P:
T
69
I
P:
N
225
Y
Deletions
None
Insertions
None
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