Display Name: Germany/GS_000X95L.1/2020-02-15
A. C. Langedijk, R. J. Lebbink, L. J. Bont & A. Evers

Submission details

Submission ID
PP376625.1
Date submitted
2025-03-05 12:56:55 UTC
Date released
2025-03-05 13:15:59 UTC

Authors

Author affiliations
UMC Utrecht, Paediatric Infectious Diseases

Alignment states and QC metrics

Completeness
100.00%
Length
15223
Total ambiguous nucs
0
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
0
Total SNPs
158
Total unknown nucs
0

Sample details

Collection country
Germany
Collection date
2020-02-15
Isolate name
490103019

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession
NCBI release date
2024-04-09
NCBI update date
2024-04-09

Clade & Lineage

Lineage
A.D.2.1

Nucleotide mutations

Mutations called relative to the NC_006432.1 reference

Substitutions

  • T66A
  • C165T
  • C438T
  • C480T
  • C594A
  • T754A
  • C1012T
  • G1050A
  • T1359C
  • G1368A
  • A1539G
  • G1560A
  • C1788T
  • C1806T
  • T1897C
  • T2165C
  • T2250C
  • C2368T
  • Deletions
    4174, 15053
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_006432.1 reference

    Substitutions

    F

  • F:L195I
  • G

  • G:H67N
  • G:P71L
  • G:H90Y
  • G:L101F
  • G:T107P
  • G:P120T
  • G:L142S
  • G:G224E
  • G:K240R
  • G:S243I
  • G:I265L
  • G:P274L
  • G:Y280H
  • G:D284G
  • G:E287D
  • G:S294P
  • G:V303I
  • G:Y304H
  • G:T319S
  • L

  • L:I59V
  • L:G144E
  • L:P171L
  • L:K175R
  • L:R256K
  • L:P610S
  • L:L1438Q
  • L:K1589R
  • L:S1593N
  • L:H1599R
  • L:N1723S
  • L:G1731D
  • N

  • N:V352A
  • P

  • P:L55P
  • P:T69A
  • SH

  • SH:I21V
  • Deletions
    None
    Insertions
    None