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GS_000X92S.1
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Display Name: Italy/GS_000X92S.1/2019-12-15
Langedijk, A. C.;
Lebbink, R. J.;
Bont, L. J.;
Evers, A.
Submission details
Submission ID
PP376622.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-05 12:56:55 UTC
Date released
2025-03-05 13:15:59 UTC
Authors
Author affiliations
UMC Utrecht, Paediatric Infectious Diseases
Alignment states and QC metrics
Completeness
100.00%
Length
15221
Total ambiguous nucs
0
Total deleted nucs
4
Total frame shifts
0
Total inserted nucs
0
Total SNPs
190
Total unknown nucs
0
Sample details
Collection country
Italy
Collection date
2019-12-15
Isolate name
390103003
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
PP376622.1
NCBI release date
2024-04-09
NCBI update date
2024-04-09
Clade & Lineage
Lineage
A.D.5
Nucleotide mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
T
66
A
A
67
G
C
90
T
C
183
T
T
673
C
A
940
C
A
1009
G
C
1012
T
A
1021
G
T
1028
C
G
1050
A
A
1051
C
T
1254
C
T
1281
C
T
1359
C
T
1380
C
T
1422
C
T
1443
C
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Deletions
4592, 7516-7518
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
F
F:
T
122
A
G
G:
A
65
V
G:
H
90
Y
G:
L
101
F
G:
T
119
P
G:
I
134
K
G:
P
206
Q
G:
K
209
R
G:
G
224
E
G:
S
243
I
G:
L
248
I
G:
G
254
R
G:
K
262
E
G:
I
265
L
G:
D
284
S
G:
V
303
A
G:
Y
304
H
G:
L
310
P
G:
T
319
I
G:
T
320
A
L
L:
P
171
L
L:
R
256
K
L:
Y
598
H
L:
L
1438
Q
L:
S
1597
I
L:
N
1723
G
L:
G
1731
D
L:
V
1943
D
L:
N
1966
D
M
M:
M
73
L
N
N:
V
352
A
P
P:
L
55
P
Deletions
None
Insertions
None
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