Display Name: Australia/GS_000X6QJ.1/2019-09-07
Langedijk, A. C.; Lebbink, R. J.; Bont, L. J.; Evers, A.

Submission details

Submission ID
PP376542.1
Date submitted
2025-03-05 12:56:55 UTC
Date released
2025-03-05 13:15:59 UTC

Authors

Author affiliations
UMC Utrecht, Paediatric Infectious Diseases

Alignment states and QC metrics

Completeness
100.00%
Length
15226
Total ambiguous nucs
0
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
2
Total SNPs
182
Total unknown nucs
0

Sample details

Collection country
Australia
Collection date
2019-09-07
Isolate name
610102045

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession
NCBI release date
2024-04-09
NCBI update date
2024-04-09

Clade & Lineage

Lineage
A.D.5

Nucleotide mutations

Mutations called relative to the NC_006432.1 reference

Substitutions

  • T60G
  • T66A
  • A67G
  • C90T
  • C183T
  • C507T
  • C604A
  • T886C
  • A940C
  • A1009G
  • C1012T
  • T1028C
  • G1050A
  • A1051C
  • T1359C
  • T1380C
  • T1422C
  • T1443C
  • Deletions
    4592
    Insertions
    ins_547:AA

    Amino acid mutations

    Mutations called relative to the NC_006432.1 reference

    Substitutions

    F

  • F:T122A
  • G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:I134K
  • G:P206Q
  • G:G224E
  • G:T239I
  • G:S243I
  • G:L248I
  • G:N255D
  • G:K262E
  • G:I265L
  • G:G272S
  • G:D284G
  • G:V303A
  • G:Y304H
  • G:L310P
  • G:T320A
  • L

  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L1438Q
  • L:N1723G
  • L:E1725G
  • L:G1731D
  • L:I1800V
  • L:V1943D
  • L:K1947Q
  • N

  • N:V352A
  • NS2

  • NS2:D2E
  • P

  • P:L55P
  • Deletions
    None
    Insertions
    None