GS_000X6QJ.1

Display Name: GS_000X6QJ.1/2024-04-12
Lauring, A. S.; Papalambros, L. K.

Submission details

Submission ID
PP903815.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-21 13:21:37 UTC
Date released
2024-11-21 13:41:50 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-11-21 13:22insdc_ingest_userOPEN

Authors

Author affiliations
University Of Michigan, Internal Medicine - Infectious Disease

INSDC

Bioproject accession
PRJNA1079770
INSDC accession
PP903815.1
NCBI release date
2024-06-16
NCBI update date
2024-06-16

Alignment states and QC metrics

Completeness
88.34%
Length
14429
Total ambiguous nucs
0
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
1
Total SNPs
186
Total unknown nucs
979

Sample details

Collection country
USA
Collection date
2024-04-12
Isolate name
hRSV-A-G43S24L3

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
A.D.3.3

Nucleotide mutations

Substitutions

  • G587T
  • C1012T
  • G1034A
  • G1050A
  • G1075A
  • G1077A
  • T1137C
  • T1218C
  • T1326C
  • T1359C
  • G1368A
  • T1413A
  • T1422C
  • A1599C
  • C1788T
  • C1806T
  • T1962A
  • T2165C
    • Deletions
    4592
    Insertions
    ins_3154:A

    Amino acid mutations

    Substitutions

    F

  • F:T12I
  • F:T122A

    • G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:T113I
  • G:V131D
  • G:I134K
  • G:N178G
  • G:K204N
  • G:G224E
  • G:P234S
  • G:S243I
  • G:N255D
  • G:H258Q
  • G:K262E
  • G:I265L
  • G:H266L
  • G:T268I
  • G:E271K

    • L

  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L835M
  • L:I1114V
  • L:I1191V
  • L:L1438Q

    • N

  • N:V352A

    • P

  • P:L55P
  • P:T92M
    • Deletions
    None
    Insertions
    None