GS_000X6LS.1

Display Name: GS_000X6LS.1/2024-03-20
Lauring, A. S.; Papalambros, L. K.

Submission details

Submission ID
PP903810.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-21 13:21:37 UTC
Date released
2024-11-21 13:41:50 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-11-21 13:22insdc_ingest_userOPEN

Authors

Author affiliations
University Of Michigan, Internal Medicine - Infectious Disease

INSDC

Bioproject accession
PRJNA1079770
INSDC accession
PP903810.1
NCBI release date
2024-06-16
NCBI update date
2024-06-16

Alignment states and QC metrics

Completeness
90.23%
Length
14676
Total ambiguous nucs
0
Total deleted nucs
4
Total frame shifts
0
Total inserted nucs
0
Total SNPs
193
Total unknown nucs
942

Sample details

Collection country
USA
Collection date
2024-03-20
Isolate name
hRSV-A-G43S14N3

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
A.D.5.2

Nucleotide mutations

Substitutions

  • T473A
  • T508C
  • C516T
  • T697C
  • G1248A
  • T1254C
  • T1281C
  • T1359C
  • G1368A
  • T1380C
  • T1422C
  • T1443C
  • C1677T
  • C1788T
  • C1806T
  • A2031T
  • T2064C
  • T2165C
    • Deletions
    4592, 7516-7518
    Insertions
    None

    Amino acid mutations

    Substitutions

    F

  • F:S55G
  • F:I59V
  • F:A103T
  • F:T122A
  • F:N124T

    • G

  • G:A57V
  • G:P71L
  • G:H90Y
  • G:L101F
  • G:I134K
  • G:P206Q
  • G:K209R
  • G:G224E
  • G:T235I
  • G:S243I
  • G:L248I
  • G:K262E
  • G:I265L
  • G:D284G
  • G:Q302K
  • G:V303A
  • G:Y304H
  • G:L310P

    • L

  • L:P171L
  • L:R256K
  • L:L1438Q
  • L:N1723G
  • L:E1725G
  • L:G1731D
  • L:S1745L
  • L:V1943D

    • M

  • M:M73L

    • N

  • N:V352A

    • NS1

  • NS1:F135Y

    • P

  • P:L55P
  • P:T69I
    • Deletions
    None
    Insertions
    None