GS_000X6KU.1

Display Name: GS_000X6KU.1/2024-03-16
Lauring, A. S.; Papalambros, L. K.

Submission details

Submission ID
PP903809.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-21 13:21:37 UTC
Date released
2024-11-21 13:41:50 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-11-21 13:22insdc_ingest_userOPEN

Authors

Author affiliations
University Of Michigan, Internal Medicine - Infectious Disease

INSDC

Bioproject accession
PRJNA1079770
INSDC accession
PP903809.1
NCBI release date
2024-06-16
NCBI update date
2024-06-16

Alignment states and QC metrics

Completeness
81.03%
Length
14123
Total ambiguous nucs
0
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
1
Total SNPs
160
Total unknown nucs
1786

Sample details

Collection country
USA
Collection date
2024-03-16
Isolate name
hRSV-A-G43S14T0

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
A.D.1.5

Nucleotide mutations

Substitutions

  • T928C
  • G1000A
  • C1012T
  • T1048C
  • G1050A
  • T1224C
  • T1359C
  • G1662A
  • T1668C
  • T1671C
  • C1788T
  • T1791C
  • C1806T
  • T1882C
  • T1980C
  • T2139C
  • T2165C
  • G2285A
    • Deletions
    7555
    Insertions
    ins_2299:G

    Amino acid mutations

    Substitutions

    F

  • F:V127I

    • G

  • G:I134K
  • G:L142S
  • G:G224V
  • G:S243I
  • G:K262E
  • G:I265L
  • G:D284G
  • G:Y304H
  • G:T319I
  • G:T320A

    • L

  • L:P171L
  • L:T179S
  • L:S216N
  • L:R256K
  • L:Y598H
  • L:M1225I
  • L:L1438Q
  • L:V1472G
  • L:I1653V
  • L:K1661N

    • M

  • M:M43I

    • N

  • N:V352A

    • P

  • P:L55P
    • Deletions
    None
    Insertions
    None