Display Name: France/GS_000X6KU.1/2019-01-07
Langedijk, A. C.; Lebbink, R. J.; Bont, L. J.; Evers, A.

Submission details

Submission ID
PP376537.1
Date submitted
2025-03-05 12:56:55 UTC
Date released
2025-03-05 13:15:59 UTC

Authors

Author affiliations
UMC Utrecht, Paediatric Infectious Diseases

Alignment states and QC metrics

Completeness
99.99%
Length
15223
Total ambiguous nucs
0
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
1
Total SNPs
188
Total unknown nucs
0

Sample details

Collection country
France
Collection date
2019-01-07
Isolate name
330102011

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession
NCBI release date
2024-04-09
NCBI update date
2024-04-09

Clade & Lineage

Lineage
A.D.1

Nucleotide mutations

Mutations called relative to the NC_006432.1 reference

Substitutions

  • C42T
  • T66A
  • A67G
  • C90T
  • C183T
  • G198A
  • T249A
  • C480A
  • C528T
  • G551A
  • G664A
  • T697C
  • T967A
  • G1000A
  • C1012T
  • T1013C
  • T1048C
  • G1050A
  • Deletions
    3213, 4592
    Insertions
    ins_2298:A

    Amino acid mutations

    Mutations called relative to the NC_006432.1 reference

    Substitutions

    F

  • F:L6F
  • G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:G106E
  • G:S111F
  • G:I134K
  • G:L142S
  • G:G224E
  • G:S243I
  • G:K262E
  • G:I265L
  • G:P276S
  • G:D284G
  • G:Y304H
  • G:T320A
  • L

  • L:N143D
  • L:P171L
  • L:T179S
  • L:R256K
  • L:Y598H
  • L:L1438Q
  • L:I1653V
  • L:K1661N
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • L:L2058I
  • M

  • M:M43I
  • N

  • N:V352A
  • NS2

  • NS2:N123K
  • P

  • P:L55P
  • Deletions
    None
    Insertions
    None