GS_000X4UC.1

Display Name: Canada/GS_000X4UC.1/2020-01-03
Langedijk, A. C.; Lebbink, R. J.; Bont, L. J.; Evers, A.

Submission details

Submission ID
PP376478.1
Submitting group
Date submitted
2025-03-05 12:56:55 UTC
Date released
2025-03-05 13:15:59 UTC

Authors

Author affiliations
UMC Utrecht, Paediatric Infectious Diseases

Alignment states and QC metrics

Completeness
100.00%
Length
15227
Total ambiguous nucs
0
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
3
Total SNPs
138
Total unknown nucs
0

Sample details

Collection country
Canada
Collection date
2020-01-03
Isolate name
010203023

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession
NCBI release date
2024-04-09
NCBI update date
2024-04-09

Clade & Lineage

Lineage
A.D.2.2

Nucleotide mutations

Mutations called relative to the NC_006432.1 reference

Substitutions

  • T66A
  • A67G
  • C507T
  • C531T
  • A655G
  • C850T
  • G925A
  • C1036T
  • G1049A
  • G1050A
  • T1061C
  • G1075A
  • A1200T
  • T1287C
  • T1359C
  • A1455G
  • G1560A
  • C1788T
    • Deletions
    4175
    Insertions
    ins_3183:G, ins_547:AA

    Amino acid mutations

    Mutations called relative to the NC_006432.1 reference

    Substitutions

    F

  • F:A107T

    • G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:G224E
  • G:G254E
  • G:I265L
  • G:D284G
  • G:E287K

    • L

  • L:P171L
  • L:R256K
  • L:L1159S
  • L:L1438Q
  • L:N1723S
  • L:K1749R
  • L:V2129I

    • M

  • M:P44Q
  • M:M254I

    • N

  • N:V352A

    • P

  • P:L55P
    • Deletions
    None
    Insertions
    None