Display Name: Canada/GS_000X0H4.1/2019-12-15
A. C. Langedijk, R. J. Lebbink, L. J. Bont & A. Evers

Submission details

Submission ID
PP376331.1
Date submitted
2025-03-05 12:56:55 UTC
Date released
2025-03-05 13:15:28 UTC

Authors

Author affiliations
UMC Utrecht, Paediatric Infectious Diseases

Alignment states and QC metrics

Completeness
100.00%
Length
15226
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
1
Total SNPs
170
Total unknown nucs
0

Sample details

Collection country
Canada
Collection date
2019-12-15
Isolate name
010203017

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession
NCBI release date
2024-04-09
NCBI update date
2024-04-09

Clade & Lineage

Lineage
A.D

Nucleotide mutations

Mutations called relative to the NC_006432.1 reference

Substitutions

  • T66A
  • A67G
  • G87A
  • C183T
  • T186C
  • T279C
  • G288A
  • C604T
  • T862C
  • C1012T
  • G1049A
  • G1050A
  • G1089T
  • G1230A
  • T1287C
  • T1359C
  • A1362G
  • C1788T
  • Deletions
    None
    Insertions
    ins_3154:A

    Amino acid mutations

    Mutations called relative to the NC_006432.1 reference

    Substitutions

    G

  • G:R8H
  • G:P71L
  • G:H90Y
  • G:G224E
  • G:S243I
  • G:T249I
  • G:I265L
  • G:D284G
  • G:Y297H
  • G:L310P
  • G:S317T
  • L

  • L:G144E
  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L1438Q
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • N

  • N:V352A
  • P

  • P:L55P
  • P:K103R
  • P:I106M
  • P:N111S
  • Deletions
    None
    Insertions
    None