GS_000WZ16.1

Display Name: GS_000WZ16.1/2024-02-29
Roychoudhury, P.; Klein, E. J.; Strelitz, B.; Grioni, H.; Moline, H. L.; Tannis, A.; Ellis, S. E.; Xie, H.; Kong, K.; Sereewit, J.; Greninger, A.; Englund, J. A.

Submission details

Submission ID
PP776593.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-21 13:21:37 UTC
Date released
2024-11-21 13:41:19 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-11-21 13:22insdc_ingest_userOPEN

Authors

Author affiliations
University of Washington, Laboratory Medicine and Pathology

Alignment states and QC metrics

Completeness
99.90%
Length
15249
Total ambiguous nucs
4
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
25
Total SNPs
199
Total unknown nucs
11

Sample details

Collection country
USA
Collection subdivision level 1
Washington
Collection date
2024-02-29
Isolate name
WA-SCH-9354913

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession
PP776593.1
NCBI release date
2024-05-14
NCBI update date
2024-10-28

Clade & Lineage

Lineage
A.D.3.3

Nucleotide mutations

Substitutions

  • T59C
  • T66A
  • A67G
  • G74A
  • C90T
  • C183T
  • A354G
  • G587T
  • T958C
  • C1012T
  • G1034A
  • G1050A
  • G1077A
  • T1137C
  • T1218C
  • T1326C
  • T1359C
  • G1368A
    • Deletions
    4174
    Insertions
    ins_15115:T, ins_0:CAACAAACTTGC, ins_3154:A, ins_15225:GTTTTTGACAC

    Amino acid mutations

    Substitutions

    F

  • F:T12I
  • F:A16V

    • G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:S111P
  • G:T113I
  • G:V131D
  • G:I134K
  • G:N178G
  • G:K204N
  • G:G224E
  • G:P234S
  • G:S243I
  • G:N251K
  • G:N255D
  • G:H258Q
  • G:K262E
  • G:I265L
  • G:H266L

    • L

  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L835M
  • L:I1114V
  • L:L1438Q
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • L:I1834V

    • N

  • N:V352A

    • NS1

  • NS1:G2D

    • P

  • P:L55P
  • P:T92M
    • Deletions
    None
    Insertions
    None