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GS_000WYWG.1
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Display Name: South_Africa/GS_000WYWG.1/2018-05-10
Langedijk, A. C.;
Lebbink, R. J.;
Bont, L. J.;
Evers, A.
Submission details
Submission ID
PP376276.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-05 12:56:55 UTC
Date released
2025-03-05 13:15:28 UTC
Authors
Author affiliations
UMC Utrecht, Paediatric Infectious Diseases
Alignment states and QC metrics
Completeness
99.99%
Length
15223
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
171
Total unknown nucs
0
Sample details
Collection country
South Africa
Collection date
2018-05-10
Isolate name
270101083
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
PP376276.1
NCBI release date
2024-04-09
NCBI update date
2024-04-09
Clade & Lineage
Lineage
A.D
Nucleotide mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
T
66
A
A
67
G
C
90
T
C
183
T
T
372
C
T
474
A
A
523
G
G
745
A
C
1012
T
G
1050
A
G
1077
A
C
1128
T
G
1233
A
T
1359
C
C
1557
T
C
1788
T
C
1806
T
C
1818
T
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Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
F
F:
V
127
A
G
G:
P
71
L
G:
H
90
Y
G:
L
101
F
G:
I
134
K
G:
T
210
I
G:
G
224
E
G:
S
243
I
G:
L
248
F
G:
K
262
E
G:
I
265
L
G:
P
274
L
G:
D
284
S
G:
E
295
K
G:
Y
304
H
G:
L
310
P
G:
L
314
P
G:
T
319
I
G:
T
320
K
L
L:
P
171
L
L:
R
256
K
L:
Y
598
H
L:
V
1219
I
L:
I
1433
V
L:
L
1438
Q
L:
P
1720
Q
L:
N
1723
S
L:
E
1725
D
L:
G
1731
D
N
N:
V
352
A
NS1
NS1:
F
135
L
P
P:
L
55
P
Deletions
None
Insertions
None
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