GS_000WYWG.1

Display Name: GS_000WYWG.1/2024-02-27
Roychoudhury, P.; Klein, E. J.; Strelitz, B.; Grioni, H.; Moline, H. L.; Tannis, A.; Ellis, S. E.; Xie, H.; Kong, K.; Sereewit, J.; Greninger, A.; Englund, J. A.

Submission details

Submission ID
PP770469.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-21 13:21:37 UTC
Date released
2024-11-21 13:41:19 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-11-21 13:22insdc_ingest_userOPEN

Authors

Author affiliations
University of Washington, Laboratory Medicine and Pathology

Alignment states and QC metrics

Completeness
99.21%
Length
15102
Total ambiguous nucs
0
Total deleted nucs
3
Total frame shifts
0
Total inserted nucs
0
Total SNPs
221
Total unknown nucs
0

Sample details

Collection country
USA
Collection subdivision level 1
Washington
Collection date
2024-02-27
Isolate name
WA-SCH-6108712

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession
PP770469.1
NCBI release date
2024-05-14
NCBI update date
2024-10-28

Clade & Lineage

Lineage
A.D.1

Nucleotide mutations

Substitutions

  • T66A
  • A67G
  • C90T
  • T142C
  • C183T
  • G198A
  • T210C
  • A399G
  • C528A
  • G551A
  • G555A
  • G590A
  • T659C
  • G664A
  • T697C
  • T922C
  • C952T
  • G1000A
    • Deletions
    3190, 4174, 4592
    Insertions
    None

    Amino acid mutations

    Substitutions

    F

  • F:S377N

    • G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:I134K
  • G:L142S
  • G:P222L
  • G:G224E
  • G:K240R
  • G:S243I
  • G:G254E
  • G:K262E
  • G:I265L
  • G:Y273H
  • G:D284G
  • G:Y304H
  • G:L314P
  • G:T320A

    • L

  • L:N143D
  • L:P171L
  • L:T179S
  • L:R256K
  • L:Y598H
  • L:L1438Q
  • L:I1653V
  • L:K1661N
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • L:S1789F
  • L:Y2163N

    • M

  • M:M43I

    • N

  • N:V352A
  • N:K379R

    • P

  • P:L55P

    • SH

  • SH:I38S
    • Deletions
    None
    Insertions
    None