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Influenza A/H1N1pdm
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RSV-A
RSV B
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GS_000WYUL.1
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Display Name: South_Africa/GS_000WYUL.1/2018-04-10
Langedijk,
A. C.; Lebbink,
R. J.; Bont,
L. J.; Evers,
A.
Submission details
Submission ID
PP376274.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-05 12:56:55 UTC
Date released
2025-03-05 13:15:28 UTC
Authors
Author affiliations
UMC Utrecht, Paediatric Infectious Diseases
Alignment states and QC metrics
Completeness
99.99%
Length
15224
Total ambiguous nucs
0
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
2
Total SNPs
164
Total unknown nucs
0
Sample details
Collection country
South Africa
Collection date
2018-04-10
Isolate name
270101038
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
PP376274.1
NCBI release date
2024-04-09
NCBI update date
2024-04-09
Clade & Lineage
Lineage
A.D
Nucleotide mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
T
66
A
A
67
G
C
90
T
C
183
T
T
297
C
T
560
C
C
1012
T
G
1050
A
T
1359
C
C
1677
T
C
1788
T
C
1806
T
T
1827
C
T
2165
C
G
2298
A
A
2392
G
T
2481
C
C
2500
T
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Deletions
4592
Insertions
ins_15115:TT
Amino acid mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
F
F:
A
23
T
F:
A
518
D
G
G:
A
57
T
G:
P
71
L
G:
H
90
Y
G:
L
101
F
G:
Q
110
L
G:
S
124
L
G:
S
128
F
G:
I
134
K
G:
D
214
E
G:
G
224
E
G:
S
243
I
G:
K
262
E
G:
I
265
L
G:
P
274
L
G:
D
284
G
G:
E
286
K
G:
P
298
L
G:
S
311
P
L
L:
P
171
L
L:
R
256
K
L:
Y
598
H
L:
L
1438
Q
L:
N
1723
S
L:
E
1725
G
L:
G
1731
D
M
M:
P
44
S
N
N:
V
352
A
P
P:
L
55
P
P:
P
65
S
SH
SH:
I
38
T
SH:
V
49
I
Deletions
None
Insertions
None
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