GS_000WYUL.1

Display Name: GS_000WYUL.1/2024-04-17
Bendall, E. E.; Lauring, A. S.

Submission details

Submission ID
PQ066221.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-21 13:21:37 UTC
Date released
2024-11-21 13:41:19 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-11-21 13:22insdc_ingest_userOPEN

Authors

Author affiliations
University of Michigan, Department of Microbiology

INSDC

Bioproject accession
PRJNA1079770
INSDC accession
PQ066221.1
NCBI release date
2024-07-30
NCBI update date
2024-07-30

Alignment states and QC metrics

Completeness
93.68%
Length
14683
Total ambiguous nucs
0
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
1
Total SNPs
199
Total unknown nucs
421

Sample details

Collection country
USA
Collection date
2024-04-17
Isolate name
hRSV-A-G43S29H4

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
A.D.3

Nucleotide mutations

Substitutions

  • G555A
  • A565G
  • G587T
  • C611A
  • G972A
  • C983A
  • C1012T
  • G1034A
  • G1050A
  • G1077A
  • G1093T
  • T1359C
  • T1413A
  • T1422C
  • T1671C
  • C1788T
  • C1806T
  • T1821C
    • Deletions
    4174, 4592
    Insertions
    ins_3154:A

    Amino acid mutations

    Substitutions

    F

  • F:T12I
  • F:T122A

    • G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:I114T
  • G:V131D
  • G:I134K
  • G:N178G
  • G:G224E
  • G:S243I
  • G:T245A
  • G:G254R
  • G:H258Q
  • G:K262E
  • G:I265L
  • G:H266L
  • G:D284G
  • G:Y297H
  • G:P298L

    • L

  • L:N37D
  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L835M
  • L:L1438Q
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • L:K2064R
  • L:T2069A

    • N

  • N:V352A

    • NS2

  • NS2:H5N

    • P

  • P:L55P
  • P:T92I
    • Deletions
    None
    Insertions
    None