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Influenza A/H5N1
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GS_000WYNY.1
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Display Name: GS_000WYNY.1/2024-02-27
Roychoudhury,
P.; Klein,
E. J.; Strelitz,
B.; Grioni,
H.; Moline,
H. L.; Tannis,
A.; Ellis,
S. E.; Xie,
H.; Kong,
K.; Sereewit,
J.; Greninger,
A.; Englund,
J. A.
Submission details
Submission ID
PP770453.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-21 13:21:37 UTC
Date released
2024-11-21 13:41:19 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-11-21 13:22
insdc_ingest_user
OPEN
Close
(history)
Authors
Author affiliations
University of Washington, Laboratory Medicine and Pathology
Alignment states and QC metrics
Completeness
99.95%
Length
15222
Total ambiguous nucs
1
Total deleted nucs
4
Total frame shifts
0
Total inserted nucs
7
Total SNPs
229
Total unknown nucs
1
Sample details
Collection country
USA
Collection subdivision level 1
Washington
Collection date
2024-02-27
Isolate name
WA-SCH-3062680
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
PP770453.1
NCBI release date
2024-05-14
NCBI update date
2024-10-28
Clade & Lineage
Lineage
A.D.5.2
Nucleotide mutations
Substitutions
T
66
A
A
67
G
G
69
A
C
90
T
C
183
T
G
198
A
T
246
C
T
270
G
G
376
T
T
673
C
T
675
C
T
697
C
A
813
G
T
886
C
A
940
C
A
1009
G
C
1012
T
A
1021
G
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Deletions
4592, 7516-7518
Insertions
ins_15225:ACAC, ins_15213:GG, ins_15217:T
Amino acid mutations
Substitutions
F
F:
A
103
T
F:
T
122
A
G
G:
A
57
V
G:
P
71
L
G:
H
90
Y
G:
L
101
F
G:
I
134
K
G:
P
206
Q
G:
K
209
R
G:
G
224
E
G:
T
235
I
G:
S
243
I
G:
L
248
I
G:
G
254
R
G:
K
262
E
G:
I
265
L
G:
D
284
G
G:
V
303
A
G:
Y
304
H
G:
L
310
P
G:
T
319
I
G:
T
320
A
L
L:
P
171
L
L:
R
256
K
L:
Y
598
H
L:
L
1438
Q
L:
N
1723
G
L:
E
1725
G
L:
S
1730
I
L:
G
1731
D
L:
A
1927
T
L:
V
1943
D
M
M:
M
73
L
N
N:
V
352
A
NS1
NS1:
G
103
C
NS2
NS2:
I
26
T
NS2:
K
72
R
P
P:
L
55
P
P:
T
69
I
P:
R
81
K
Deletions
None
Insertions
None
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