GS_000E0CG.1

Display Name: GS_000E0CG.1/2024-05-17
Roychoudhury, P.; Xie, X.; Sereewit, J.; Ellis, S.; Greninger, A.

Submission details

Submission ID
PQ390743.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-21 13:19:36 UTC
Date released
2024-11-21 13:33:45 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-11-21 13:20insdc_ingest_userOPEN

Authors

Author affiliations
University of Washington, Laboratory Medicine and Pathology

Alignment states and QC metrics

Completeness
99.88%
Length
15255
Total ambiguous nucs
18
Total deleted nucs
5
Total frame shifts
0
Total inserted nucs
38
Total SNPs
145
Total unknown nucs
0

Sample details

Collection country
USA
Collection subdivision level 1
Washington
Collection date
2024-05-17
Isolate name
WA-UW-76197

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession
PQ390743.1
NCBI release date
2024-10-06
NCBI update date
2024-10-28

Clade & Lineage

Lineage
B.D.4.1.1

Nucleotide mutations

Substitutions

  • G1A
  • C3G
  • A23G
  • G231A
  • G434A
  • A511G
  • G513T
  • G546A
  • G579A
  • C610T
  • C628A
  • T760C
  • G805A
  • C817T
  • C904A
  • C1005T
  • A1111G
  • A1357G
    • Deletions
    973, 7402, 15200-15202
    Insertions
    ins_15210:GTT, ins_15222:TTATTT, ins_15089:ATA, ins_0:ACTACAAACTTGCACACTCGAAAAAA

    Amino acid mutations

    Substitutions

    F

  • F:M115I
  • F:S190N
  • F:S211N

    • G

  • G:A74V
  • G:R98G
  • G:P101L
  • G:H112N
  • G:S119P
  • G:I252T
  • G:S265P
  • G:I268T
  • G:A269V
  • G:L270P
  • G:S275P
  • G:S283P
  • G:L284P
  • G:Y285H
  • G:S309F

    • L

  • L:K192R
  • L:I1588T
  • L:V1716A
  • L:I1719T
  • L:T1742M
  • L:F1760L
  • L:T1987I
  • L:E2165D

    • N

  • N:V97I

    • NS1

  • NS1:V59I
  • NS1:M126I

    • SH

  • SH:F10L
    • Deletions
    None
    Insertions
    None