GS_000E022.1

Display Name: Germany/GS_000E022.1/2010-01-01
Prifert, C.; Streng, A.; Schultz, J.; Liese, J. G.; Weissbrich, B.; Hofmann, D.

Submission details

Submission ID
MG930128.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-05 12:56:13 UTC
Date released
2025-03-05 13:03:31 UTC

Authors

Author affiliations
Institute of Virology and Immunobiology, University of Wuerzburg

Alignment states and QC metrics

Completeness
2.19%
Length
261
Total ambiguous nucs
0
Total deleted nucs
72
Total frame shifts
0
Total inserted nucs
0
Total SNPs
11
Total unknown nucs
0

Sample details

Collection country
Germany
Collection subdivision level 1
Wuerzburg
Collection date
2010-01-01

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession
MG930128.1
NCBI release date
2018-03-19
NCBI update date
2018-03-19

Clade & Lineage

Lineage
A.3.1.1

Nucleotide mutations

Mutations called relative to the NC_006432.1 reference

Substitutions

  • G5322A
  • G5346A
  • T5368C
  • C5374A
  • G5379T
  • A5405T
  • A5409C
  • A5435G
  • A5444C
  • C5472T
  • T5592C
    • Deletions
    5501-5572
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_006432.1 reference

    Substitutions

    G

  • G:G224E
  • G:G232E
  • G:S243I
  • G:T252S
  • G:K253T
  • G:P298L
  • G:L314P
    • Deletions
    G:262-285
    Insertions
    None