GenSpectrum
RSV B
Influenza A/H5N1
RSV-A
RSV B
Browse
Loculus
Browse
Docs
API docs
GS_000DV9V.1
Download
Download FASTA
Download metadata TSV
Display Name: GS_000DV9V.1/2024-05-01
Rothstein,
A. P.; Qiu,
X.; Collins,
S.; Muir,
G.; Simas,
A.; Sum,
A.; Lu,
B.; Cosca,
B.; Girinathan,
B.; Leeson,
P.; Phillipson,
C. W.; Plocik,
A.; Simen,
B.
Submission details
Submission ID
PQ117664.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-21 13:19:36 UTC
Date released
2024-11-21 13:33:45 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-11-21 13:20
insdc_ingest_user
OPEN
Close
(history)
Authors
Author affiliations
Ginkgo Bioworks, Ginkgo Biosecurity
Alignment states and QC metrics
Completeness
99.78%
Length
15192
Total ambiguous nucs
0
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
5
Total SNPs
135
Total unknown nucs
0
Sample details
Collection country
USA
Collection subdivision level 1
New York
Collection date
2024-05-01
Isolate name
GKISBBBC29285
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
PQ117664.1
NCBI release date
2024-08-07
NCBI update date
2024-08-07
Clade & Lineage
Lineage
B.D.E.1
Nucleotide mutations
Substitutions
T
353
A
G
513
T
G
579
A
A
894
T
C
1235
T
G
1385
A
C
1708
T
G
1732
A
G
1768
A
T
1846
C
C
2074
T
C
2198
T
C
2511
T
C
2554
T
C
2691
T
A
2925
T
G
3036
C
A
3060
G
Show more
Deletions
973, 4586
Insertions
ins_15089:ATATA
Amino acid mutations
Substitutions
F
F:
F
12
I
F:
S
190
N
F:
S
211
N
F:
S
389
P
G
G:
A
74
V
G:
S
100
D
G:
T
131
A
G:
I
137
T
G:
K
199
R
G:
P
214
S
G:
T
220
A
G:
P
221
L
G:
T
238
A
G:
T
248
I
G:
I
252
T
G:
I
268
T
G:
A
269
V
G:
S
275
P
G:
Q
282
L
G:
S
283
F
G:
Y
285
H
L
L:
R
138
K
L:
S
169
P
L:
V
1334
I
L:
R
1759
K
L:
I
1969
T
L:
T
1987
I
N
N:
V
97
I
NS2
NS2:
E
104
V
Deletions
None
Insertions
None
Load sequences