GS_000DV61.1

Display Name: Taiwan/GS_000DV61.1/2011-01-01
Chi, H.; Hsiao, K.-L.; Weng, L.-C.; Chiu, N.-C.; Huang, L.-M.; Chiu, Y.-Y.; Liu, C.-P.; Liu, H.-F.

Submission details

Submission ID
MF496502.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-05 12:56:13 UTC
Date released
2025-03-05 13:03:31 UTC

Authors

Author affiliations
Mackay Memorial Hospital, Pediatrics

Alignment states and QC metrics

Completeness
4.37%
Length
594
Total ambiguous nucs
0
Total deleted nucs
72
Total frame shifts
0
Total inserted nucs
0
Total SNPs
20
Total unknown nucs
0

Sample details

Collection country
Taiwan
Collection date
2011-01-01
Isolate name
R100-42

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession
MF496502.1
NCBI release date
2017-08-30
NCBI update date
2017-08-30

Clade & Lineage

Lineage
A.3.1

Nucleotide mutations

Mutations called relative to the NC_006432.1 reference

Substitutions

  • C4952T
  • C5001T
  • T5052A
  • A5054G
  • T5075C
  • T5076A
  • C5273A
  • G5322A
  • T5332C
  • T5341C
  • G5346A
  • A5360G
  • T5368C
  • C5374A
  • G5379T
  • A5409C
  • T5540A
  • C5544T
  • T5592C
  • A5609T
    • Deletions
    5435-5506
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_006432.1 reference

    Substitutions

    G

  • G:L101F
  • G:S117L
  • G:I134K
  • G:N135D
  • G:L142Q
  • G:L208I
  • G:G224E
  • G:G232E
  • G:N237D
  • G:S243I
  • G:K253T
  • G:Y297N
  • G:P298L
  • G:L314P
  • G:T320S
    • Deletions
    G:262-285
    Insertions
    None