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RSV B
Influenza A/H5N1
RSV-A
RSV B
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GS_000DV53.1
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Display Name: GS_000DV53.1/2024-05-25
Rothstein,
A. P.; Qiu,
X.; Collins,
S.; Muir,
G.; Simas,
A.; Sum,
A.; Lu,
B.; Cosca,
B.; Girinathan,
B.; Leeson,
P.; Phillipson,
C. W.; Plocik,
A.; Simen,
B.
Submission details
Submission ID
PQ117660.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-21 13:19:36 UTC
Date released
2024-11-21 13:33:45 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-11-21 13:20
insdc_ingest_user
OPEN
Close
(history)
Authors
Author affiliations
Ginkgo Bioworks, Ginkgo Biosecurity
Alignment states and QC metrics
Completeness
99.45%
Length
15143
Total ambiguous nucs
0
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
6
Total SNPs
148
Total unknown nucs
0
Sample details
Collection country
USA
Collection subdivision level 1
Virginia
Collection date
2024-05-25
Isolate name
GKISBBBC13858
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
PQ117660.1
NCBI release date
2024-08-07
NCBI update date
2024-08-07
Clade & Lineage
Lineage
B.D.E.1
Nucleotide mutations
Substitutions
A
21
C
A
134
G
T
504
C
G
513
A
C
515
T
G
579
A
C
688
T
T
922
C
C
998
A
A
1007
G
G
1385
A
T
1396
C
G
1732
A
T
1846
C
C
2074
T
C
2198
T
C
2227
A
C
2554
T
Show more
Deletions
973, 4586
Insertions
ins_15092:ATATAT
Amino acid mutations
Substitutions
F
F:
R
42
K
F:
S
190
N
F:
S
211
N
F:
S
389
P
G
G:
A
74
V
G:
S
100
G
G:
A
116
T
G:
T
131
A
G:
I
137
T
G:
K
185
R
G:
P
214
S
G:
P
221
L
G:
I
252
T
G:
K
256
N
G:
I
268
T
G:
S
275
P
G:
Y
285
H
G:
S
295
P
L
L:
K
570
R
L:
I
1434
T
L:
R
1759
K
L:
V
1934
G
L:
V
1965
I
L:
T
1987
I
M
M:
I
159
V
M:
N
171
T
N
N:
V
97
I
Deletions
None
Insertions
None
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