GS_000DV45.1

Display Name: GS_000DV45.1/2024-05-16
Rothstein, A. P.; Qiu, X.; Collins, S.; Muir, G.; Simas, A.; Sum, A.; Lu, B.; Cosca, B.; Girinathan, B.; Leeson, P.; Phillipson, C. W.; Plocik, A.; Simen, B.

Submission details

Submission ID
PQ117659.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-21 13:19:36 UTC
Date released
2024-11-21 13:33:45 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-11-21 13:20insdc_ingest_userOPEN

Authors

Author affiliations
Ginkgo Bioworks, Ginkgo Biosecurity

Alignment states and QC metrics

Completeness
99.38%
Length
15131
Total ambiguous nucs
0
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
5
Total SNPs
141
Total unknown nucs
0

Sample details

Collection country
USA
Collection subdivision level 1
California
Collection date
2024-05-16
Isolate name
GKISBBBC19927

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession
PQ117659.1
NCBI release date
2024-08-07
NCBI update date
2024-08-07

Clade & Lineage

Lineage
B.D.E.1

Nucleotide mutations

Substitutions

  • A131G
  • A134G
  • G513T
  • G579A
  • C688T
  • C946T
  • C998A
  • G1385A
  • G1732A
  • T1846C
  • C2074T
  • A2110G
  • C2198T
  • C2554T
  • A2643G
  • A2928G
  • G3036C
  • A3060G
    • Deletions
    973, 4586
    Insertions
    ins_15089:ATATA

    Amino acid mutations

    Substitutions

    F

  • F:R42K
  • F:S190N
  • F:S211N
  • F:S389P

    • G

  • G:A74V
  • G:S100G
  • G:T131A
  • G:I137T
  • G:N202T
  • G:P214S
  • G:P221L
  • G:P229L
  • G:I252T
  • G:K256N
  • G:S265P
  • G:I268T
  • G:S275P
  • G:Y285H

    • L

  • L:K570R
  • L:R1759K
  • L:V1965I
  • L:T1987I

    • M

  • M:K172R

    • N

  • N:V97I
    • Deletions
    None
    Insertions
    None