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GS_000DUYH.1
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Display Name: Taiwan/GS_000DUYH.1/2012-01-01
Chi, H.;
Hsiao, K.-L.;
Weng, L.-C.;
Chiu, N.-C.;
Huang, L.-M.;
Chiu, Y.-Y.;
Liu, C.-P.;
Liu, H.-F.
Submission details
Submission ID
MF496494.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-05 12:56:13 UTC
Date released
2025-03-05 13:03:31 UTC
Authors
Author affiliations
Mackay Memorial Hospital, Pediatrics
Alignment states and QC metrics
Completeness
5.14%
Length
594
Total ambiguous nucs
0
Total deleted nucs
189
Total frame shifts
0
Total inserted nucs
0
Total SNPs
43
Total unknown nucs
0
Sample details
Collection country
Taiwan
Collection date
2012-01-01
Isolate name
R101-15
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
MF496494.1
NCBI release date
2017-08-30
NCBI update date
2017-08-30
Clade & Lineage
Lineage
A.3
Nucleotide mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
C
4952
T
G
4968
A
T
4982
C
T
5049
C
T
5052
A
A
5066
G
T
5075
C
T
5076
A
A
5086
G
C
5087
T
T
5110
C
C
5131
T
T
5158
C
C
5194
T
C
5203
T
G
5212
A
G
5254
A
A
5265
G
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Deletions
5504-5575, 5612-5728
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
G
G:
L
101
F
G:
G
106
E
G:
S
111
P
G:
I
133
T
G:
I
134
K
G:
T
139
A
G:
L
142
Q
G:
P
146
S
G:
K
205
R
G:
L
208
I
G:
P
215
L
G:
G
224
E
G:
L
226
P
G:
G
232
E
G:
K
233
Q
G:
N
237
H
G:
T
239
S
G:
N
242
I
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Deletions
G:285-308
Insertions
None
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