GS_000DUYH.1

Display Name: Taiwan/GS_000DUYH.1/2012-01-01
Chi, H.; Hsiao, K.-L.; Weng, L.-C.; Chiu, N.-C.; Huang, L.-M.; Chiu, Y.-Y.; Liu, C.-P.; Liu, H.-F.

Submission details

Submission ID
MF496494.1
Submitting group
Date submitted
2025-03-05 12:56:13 UTC
Date released
2025-03-05 13:03:31 UTC

Authors

Author affiliations
Mackay Memorial Hospital, Pediatrics

Alignment states and QC metrics

Completeness
5.14%
Length
594
Total ambiguous nucs
0
Total deleted nucs
189
Total frame shifts
0
Total inserted nucs
0
Total SNPs
43
Total unknown nucs
0

Sample details

Collection country
Taiwan
Collection date
2012-01-01
Isolate name
R101-15

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession
NCBI release date
2017-08-30
NCBI update date
2017-08-30

Clade & Lineage

Lineage
A.3

Nucleotide mutations

Mutations called relative to the NC_006432.1 reference

Substitutions

  • C4952T
  • G4968A
  • T4982C
  • T5049C
  • T5052A
  • A5066G
  • T5075C
  • T5076A
  • A5086G
  • C5087T
  • T5110C
  • C5131T
  • T5158C
  • C5194T
  • C5203T
  • G5212A
  • G5254A
  • A5265G
    • Deletions
    5504-5575, 5612-5728
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_006432.1 reference

    Substitutions

    G

  • G:L101F
  • G:G106E
  • G:S111P
  • G:I133T
  • G:I134K
  • G:T139A
  • G:L142Q
  • G:P146S
  • G:K205R
  • G:L208I
  • G:P215L
  • G:G224E
  • G:L226P
  • G:G232E
  • G:K233Q
  • G:N237H
  • G:T239S
  • G:N242I
    • Deletions
    G:285-308
    Insertions
    None