GS_000DU2A.1

Display Name: Taiwan/GS_000DU2A.1/2002-01-01
Chi, H.; Hsiao, K.-L.; Weng, L.-C.; Chiu, N.-C.; Huang, L.-M.; Chiu, Y.-Y.; Liu, C.-P.; Liu, H.-F.

Submission details

Submission ID
MF496464.1
Submitting group
Date submitted
2025-03-05 12:56:13 UTC
Date released
2025-03-05 13:03:00 UTC

Authors

Author affiliations
Mackay Memorial Hospital, Pediatrics

Alignment states and QC metrics

Completeness
4.64%
Length
594
Total ambiguous nucs
0
Total deleted nucs
113
Total frame shifts
0
Total inserted nucs
0
Total SNPs
62
Total unknown nucs
0

Sample details

Collection country
Taiwan
Collection date
2002-01-01
Isolate name
R91-335

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession
NCBI release date
2017-08-30
NCBI update date
2017-08-30

Clade & Lineage

Lineage
A.2.1.1

Nucleotide mutations

Mutations called relative to the NC_006432.1 reference

Substitutions

  • C4952T
  • C4956T
  • C4966T
  • C4974T
  • T4982A
  • A4988G
  • T5000C
  • C5016T
  • T5017C
  • T5021C
  • C5025T
  • C5028T
  • A5029G
  • C5035T
  • T5049C
  • T5052A
  • T5075C
  • T5076A
    • Deletions
    5435-5506, 5612-5652
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_006432.1 reference

    Substitutions

    G

  • G:L101F
  • G:S102F
  • G:T108I
  • G:S111T
  • G:T113A
  • G:S117P
  • G:A122V
  • G:S124P
  • G:T125I
  • G:P126L
  • G:I133T
  • G:I134K
  • G:L142Q
  • G:P146L
  • G:Q156P
  • G:N161D
  • G:N191S
  • G:P206Q
    • Deletions
    G:262-285
    Insertions
    None