GS_000D9QJ.1

Display Name: GS_000D9QJ.1/2024-04-05
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnker, L.; Wang, X.

Submission details

Submission ID
PP957816.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-21 13:19:36 UTC
Date released
2024-11-21 13:32:45 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-11-21 13:20insdc_ingest_userOPEN

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
PRJNA1048457
Biosample accession
SAMN42037001
INSDC accession
PP957816.1
NCBI release date
2024-07-03
NCBI update date
2024-07-03
SRA run accession
SRR29541214

Alignment states and QC metrics

Completeness
97.19%
Length
15141
Total ambiguous nucs
0
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
4
Total SNPs
123
Total unknown nucs
344

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2024-04-05
Isolate name
MN-MDH-RSVB-00803

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
B.D.E.1

Nucleotide mutations

Substitutions

  • A67G
  • T224C
  • G513C
  • G579A
  • A769G
  • C998A
  • G1385A
  • G1732A
  • T1747C
  • C2074T
  • A2170G
  • C2198T
  • T2346C
  • T2355C
  • C2554T
  • C2577T
  • T2601C
  • C2691T
    • Deletions
    4586
    Insertions
    ins_15092:ATAT

    Amino acid mutations

    Substitutions

    F

  • F:S190N
  • F:S211N
  • F:S389P

    • G

  • G:A74V
  • G:S100G
  • G:T131A
  • G:I137T
  • G:P214S
  • G:P221L
  • G:S243N
  • G:I252T
  • G:K256N
  • G:I268T
  • G:S275P
  • G:Y285H
  • G:P289S

    • L

  • L:K570R
  • L:R1759K
  • L:N1916Y
  • L:T1987I

    • N

  • N:V97I

    • NS1

  • NS1:N4S

    • SH

  • SH:M60I
    • Deletions
    None
    Insertions
    None