GS_000D9KU.1

Display Name: GS_000D9KU.1/2024-04-05
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnker, L.; Wang, X.

Submission details

Submission ID
PP957811.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-21 13:19:36 UTC
Date released
2024-11-21 13:32:45 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-11-21 13:20insdc_ingest_userOPEN

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
PRJNA1048457
Biosample accession
SAMN42036996
INSDC accession
PP957811.1
NCBI release date
2024-07-03
NCBI update date
2024-07-03
SRA run accession
SRR29541220

Alignment states and QC metrics

Completeness
94.11%
Length
14865
Total ambiguous nucs
0
Total deleted nucs
3
Total frame shifts
0
Total inserted nucs
1
Total SNPs
95
Total unknown nucs
542

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2024-04-05
Isolate name
MN-MDH-RSVB-00798

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
B.D.4.1.1

Nucleotide mutations

Substitutions

  • G513T
  • G579A
  • G1059T
  • T1130C
  • G1385A
  • G1546A
  • C1694T
  • G1768A
  • T1846C
  • A1864G
  • C2198T
  • A2210G
  • C2364T
  • C2519A
  • T2529C
  • T2878C
  • C2964T
  • C3067T
    • Deletions
    964, 965, 4586
    Insertions
    ins_7408:A

    Amino acid mutations

    Substitutions

    F

  • F:A111V
  • F:L125P
  • F:R209Q

    • G

  • G:A74V

    • L

  • L:I1472T
  • L:T1755I
  • L:V1818I
  • L:N1916S
  • L:T1987I

    • N

  • N:V97I
  • N:T372A

    • P

  • P:T72N
    • Deletions
    None
    Insertions
    None