GS_000D9KU.1

Display Name: Japan/GS_000D9KU.1/2021-05-24
Ono, T.; Hashimoto, K.; Norito, S.; Kume, Y.; Chishiki, M.; Okabe, H.; Sato, M.; Aso, J.; Sada, M.; Mochizuki, I.; Mashiyama, F.; Ishibashi, N.; Suziki, S.; Sakuma, H.; Takeda, M.; Shirato, K.; Kimura, H.; Hosoya, M.; Chisiki, M.

Submission details

Submission ID
LC712551.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-05 12:56:13 UTC
Date released
2025-03-05 13:02:29 UTC

Authors

Author affiliations
Pediatrics; 1 Hikariga-oka, Fukushima, Fukushima 960-1295

Alignment states and QC metrics

Completeness
2.19%
Length
333
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
10
Total unknown nucs
0

Sample details

Collection country
Japan
Collection subdivision level 1
Fukushima
Collection date
2021-05-24
Isolate name
Fukushima/RSVA/OR-249/2021

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession
LC712551.1
NCBI release date
2023-02-02
NCBI update date
2023-02-02

Clade & Lineage

Lineage
A.D

Nucleotide mutations

Mutations called relative to the NC_006432.1 reference

Substitutions

  • G5291T
  • G5322A
  • C5374A
  • G5379T
  • A5435G
  • A5444C
  • G5465A
  • A5502G
  • C5544T
  • C5607A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_006432.1 reference

    Substitutions

    G

  • G:D214Y
  • G:G224E
  • G:S243I
  • G:K262E
  • G:I265L
  • G:G272S
  • G:D284G
  • G:P298L
  • G:T319K
    • Deletions
    None
    Insertions
    None