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Influenza A/H5N1
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GS_000D602.1
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Display Name: GS_000D602.1/2024-04-02
Lauring,
A. S.; Papalambros,
L. K.
Submission details
Submission ID
PP896786.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-21 13:19:36 UTC
Date released
2024-11-21 13:32:14 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-11-21 13:20
insdc_ingest_user
OPEN
Close
(history)
Authors
Author affiliations
University Of Michigan, Internal Medicine - Infectious Disease
INSDC
Bioproject accession
PRJNA1079770
INSDC accession
PP896786.1
NCBI release date
2024-06-16
NCBI update date
2024-06-16
Alignment states and QC metrics
Completeness
82.67%
Length
14943
Total ambiguous nucs
0
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
3
Total SNPs
124
Total unknown nucs
2358
Sample details
Collection country
USA
Collection date
2024-04-02
Isolate name
hRSV-B-G43S19J8
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Clade & Lineage
Lineage
B.D.E.1
Nucleotide mutations
Substitutions
A
134
G
G
513
T
G
579
A
C
688
T
G
732
A
C
998
A
G
1029
A
G
1385
A
G
1732
A
T
1742
C
T
1846
C
C
2074
T
C
2198
T
C
2248
T
C
2514
T
C
2554
T
C
2691
T
G
3036
C
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Deletions
973, 4586
Insertions
ins_5317:AAA
Amino acid mutations
Substitutions
F
F:
R
42
K
F:
S
190
N
F:
S
211
N
F:
T
384
I
F:
S
389
P
F:
K
445
R
G
G:
A
74
V
G:
S
100
G
G:
K
123
T
G:
T
131
A
G:
T
133
I
G:
I
137
T
G:
P
214
S
G:
T
216
I
G:
P
221
L
G:
I
252
T
G:
K
256
N
G:
I
268
T
G:
A
269
V
G:
L
284
F
G:
Y
285
H
G:
T
298
A
L
L:
K
570
R
N
N:
V
97
I
N:
Y
216
H
NS2
NS2:
R
50
K
SH
SH:
E
56
D
Deletions
None
Insertions
ins_G:224:K
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