GS_000D5UE.1

Display Name: GS_000D5UE.1/2024-04-05
Lauring, A. S.; Papalambros, L. K.

Submission details

Submission ID
PP896780.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-21 13:19:36 UTC
Date released
2024-11-21 13:32:14 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-11-21 13:20insdc_ingest_userOPEN

Authors

Author affiliations
University Of Michigan, Internal Medicine - Infectious Disease

INSDC

Bioproject accession
PRJNA1079770
INSDC accession
PP896780.1
NCBI release date
2024-06-16
NCBI update date
2024-06-16

Alignment states and QC metrics

Completeness
98.51%
Length
15127
Total ambiguous nucs
0
Total deleted nucs
3
Total frame shifts
0
Total inserted nucs
2
Total SNPs
129
Total unknown nucs
133

Sample details

Collection country
USA
Collection date
2024-04-05
Isolate name
hRSV-B-G43S19N1

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
B.D.E.1

Nucleotide mutations

Substitutions

  • A134G
  • G513T
  • G579A
  • A581G
  • C688T
  • T838C
  • C998A
  • G1385A
  • G1732A
  • T1846C
  • C2074T
  • A2101T
  • C2198T
  • C2287T
  • C2554T
  • C2691T
  • T2904C
  • A3012G
    • Deletions
    973, 4586, 5605
    Insertions
    ins_15092:AT

    Amino acid mutations

    Substitutions

    F

  • F:R42K
  • F:T121A
  • F:S190N
  • F:S211N
  • F:S389P

    • G

  • G:A74V
  • G:S100G
  • G:T131A
  • G:I137T
  • G:K199T
  • G:P214S
  • G:P221L
  • G:I252T
  • G:K256N
  • G:I268T
  • G:A269V
  • G:S275P
  • G:L284I
  • G:Y285H

    • L

  • L:G146D
  • L:K570R
  • L:V1965I
  • L:I1969T
  • L:T1987I

    • N

  • N:V97I
    • Deletions
    None
    Insertions
    None