GS_000D5TG.1

Display Name: GS_000D5TG.1/2024-04-08
Lauring, A. S.; Papalambros, L. K.

Submission details

Submission ID
PP896779.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-21 13:19:36 UTC
Date released
2024-11-21 13:32:14 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-11-21 13:20insdc_ingest_userOPEN

Authors

Author affiliations
University Of Michigan, Internal Medicine - Infectious Disease

INSDC

Bioproject accession
PRJNA1079770
INSDC accession
PP896779.1
NCBI release date
2024-06-16
NCBI update date
2024-06-16

Alignment states and QC metrics

Completeness
94.25%
Length
14941
Total ambiguous nucs
0
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
1
Total SNPs
119
Total unknown nucs
596

Sample details

Collection country
USA
Collection date
2024-04-08
Isolate name
hRSV-B-G43S22J3

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
B.D.4.1.1

Nucleotide mutations

Substitutions

  • C175T
  • C212T
  • G513T
  • G579A
  • G649A
  • C767T
  • G955A
  • G1385A
  • G1732A
  • T1846C
  • C2074T
  • C2198T
  • C2484T
  • C2554T
  • T2697C
  • G2787A
  • C2868T
  • T2874C
    • Deletions
    973, 4586
    Insertions
    ins_5610:A

    Amino acid mutations

    Substitutions

    F

  • F:S190N
  • F:S211N

    • G

  • G:A74V
  • G:K85E
  • G:S100G
  • G:T131A
  • G:I137T
  • G:S147N
  • G:P214S
  • G:P221L
  • G:P245S
  • G:L270P

    • L

  • L:K570R
  • L:I937V
  • L:S1736C
  • L:S1739P
  • L:T1987I

    • N

  • N:V97I

    • NS1

  • NS1:A40V

    • P

  • P:K222R
    • Deletions
    None
    Insertions
    None